Publications

Peer-reviewed publications and preprints, listed in reverse chronological order.

Photoacoustic detection of genetically encoded fluorophores for neuronal subtype identification

Joel Lusk, Ethan Marschall, Christopher Miranda, Christina Aridi, Barbara Smith

Journal of Neural Engineering 22, 026048 (2025)

Shows that a genetically encoded fluorophore can be detected photoacoustically to identify specific neuron subtypes, extending optical labeling into the photoacoustic domain.

Paper

An engineered culture vessel and flow system to improve the in vitro analysis of volatile organic compounds

Jarrett Eshima, Taylor R. Pennington, Youssef Abdellatif, Angela Ponce Olea, Joel F. Lusk, Benjamin D. Ambrose, Ethan Marschall, Christopher Miranda, Paula Phan, Christina Aridi, Barbara S. Smith

Communications Engineering 4, 162 (2025)

Describes an engineered cell-culture and flow system that improves in vitro measurement of volatile organic compounds.

Paper

ActSort: An active-learning accelerated cell sorting algorithm for large-scale calcium imaging datasets

Yiqi Jiang, Hakki Akengin, Ji Zhou, Mehmet Aslihak, Yang Li, Radoslaw Chrapkiewicz, Oscar Hernandez, Sadegh Ebrahimi, Omar Jaidar, Yanping Zhang, Hakan Inan, Christopher Miranda, Fatih Dinc, Marta Blanco-Pozo, Mark Schnitzer

Advances in Neural Information Processing Systems 37 (2024)

Introduces an active-learning algorithm that speeds up cell sorting in large-scale calcium imaging datasets, reducing the manual annotation burden of population-scale neural recordings.

Paper

Automated microscope-independent fluorescence-guided micropipette

Christopher Miranda, Madeleine R. Howell, Joel F. Lusk, Ethan Marschall, Jarrett Eshima, Trent Anderson, Barbara S. Smith

Biomedical Optics Express 12, 4689 (2021)

Presents a microscope-independent, fluorescence-guided micropipette system for targeted single-cell measurements.

Paper

Side-viewing photoacoustic waveguide endoscopy

Christopher Miranda, Ethan Marschall, Blake Browning, Barbara S. Smith

Photoacoustics 19, 100167 (2020)

Introduces a side-viewing photoacoustic waveguide endoscope design for minimally invasive photoacoustic imaging.

Paper

Ovarian Cancer Detection Using Photoacoustic Flow Cytometry

Joel F. Lusk, Christopher Miranda, Barbara S. Smith

Journal of Visualized Experiments (2020)

Demonstrates a photoacoustic flow cytometry protocol for detecting circulating ovarian cancer cells.

Paper

Monitoring changes in the healthy female metabolome across the menstrual cycle using GC × GC-TOFMS

Jarrett Eshima, Stephanie Ong, Trenton J. Davis, Christopher Miranda, Devika Krishnamurthy, Abigael Nachtsheim, John Stufken, Christopher Plaisier, John Fricks, Heather D. Bean, Barbara S. Smith

Journal of Chromatography B 1121, 48–57 (2019)

Characterizes how the healthy female metabolome shifts across the menstrual cycle using comprehensive two-dimensional gas chromatography.

Paper

Photoacoustic Flow System for the Detection of Ovarian Circulating Tumor Cells Utilizing Copper Sulfide Nanoparticles

Joel F. Lusk, Christopher Miranda, Madeleine Howell, Matthew Chrest, Jarrett Eshima, Barbara S. Smith

ACS Biomaterials Science & Engineering 5, 1553–1560 (2019)

Uses copper sulfide nanoparticle contrast agents in a photoacoustic flow system to detect circulating ovarian tumor cells.

Paper

Photoacoustic micropipette

Christopher Miranda, Swathy Sampath Kumar, Jitendran Muthuswamy, Barbara S. Smith

Applied Physics Letters 113 (2018)

Introduces a photoacoustic micropipette for combined electrophysiological recording and photoacoustic-guided targeting.

Paper

Intrauterine photoacoustic and ultrasound imaging probe

Christopher Miranda, Joel Barkley, Barbara S. Smith

Journal of Biomedical Optics 23, 046008 (2018)

Develops a combined photoacoustic and ultrasound imaging probe designed for intrauterine applications.

Paper

Patents

Dual Brillouin-Photoacoustic Microscopy

2025

US 12,364,395

Patent

Integrated container adapter for photoacoustic microscopy

2026

US 12,611,673

Patent

Systems for multimodal real-time imaging for biopsies and related methods

2024

US 12,171,615

Patent

Deep brain stimulation electrode with photoacoustic and ultrasound imaging capabilities

2024

US 12,161,295

Patent

Photoacoustic voltage indicators

2024

US 12,082,938

Patent

Photoacoustic targeting with micropipette electrodes

2023

US 11,596,313

Patent

Photoacoustic and optical microscopy combiner and method of generating a photoacoustic image of a sample

2023

US 11,768,182

Patent

Miniature transducer device and related methods

2023

US 11,583,252

Patent

Elevating wheelchair

2018

US 9,980,865

Patent

Full Record

For the complete and most current publication record, see: